Laubscher E, Wang X, Razin N, et al. Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning. Cell systems. 2024;15(5):475-482.e6. doi:10.1016/j.cels.2024.04.006
Cimini BA. Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions. Journal of microscopy. 2024. doi:10.1111/jmi.13288
Akshay A, Katoch M, Abedi M, et al. SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience. 2022;12. doi:10.1093/gigascience/giad082
Akshay A, Katoch M, Abedi M, et al. SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.28.533479
Akshay A, Katoch M, Abedi M, et al. SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.28.533479
Hunter B, Nicorescu I, Foster E, et al. OPTIMAL: An OPTimised Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2023. doi:10.1002/cyto.a.24803
Sivagurunathan S, Marcotti S, Nelson CJ, et al. Bridging Imaging Users to Imaging Analysis - A community survey. Journal of microscopy. 2023. doi:10.1111/jmi.13229
Weisbart E, Tromans-Coia C, Diaz-Rohrer B, et al. CellProfiler plugins - an easy image analysis platform integration for containers and Python tools. Journal of microscopy. 2023. doi:10.1111/jmi.13223