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Integrating single-cell RNA-seq datasets with substantial batch effects.

Hrovatin K, Moinfar AA, Lapuerta AT, et al. Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.03.565463

Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.

Cosma BM, Zade RSH, Jordan EN, et al. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations. GigaScience. 2022;12. doi:10.1093/gigascience/giad100

A synthetic-diploid benchmark for accurate variant-calling evaluation.

Li H, Bloom JM, Farjoun Y, et al. A synthetic-diploid benchmark for accurate variant-calling evaluation. Nat Methods. 2018;15(8):595-597. doi:10.1038/s41592-018-0054-7

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.

Mertins P, Tang LC, Krug K, et al. Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry. Nat Protoc. 2018;13(7):1632-1661. doi:10.1038/s41596-018-0006-9