Developing open-source software for bioimage analysis: opportunities and challenges.

F1000Res
Authors
Keywords
Abstract

Fast-paced innovations in imaging have resulted in single systems producing exponential amounts of data to be analyzed. Computational methods developed in computer science labs have proven to be crucial for analyzing these data in an unbiased and efficient manner, reaching a prominent role in most microscopy studies. Still, their use usually requires expertise in bioimage analysis, and their accessibility for life scientists has therefore become a bottleneck. Open-source software for bioimage analysis has developed to disseminate these computational methods to a wider audience, and to life scientists in particular. In recent years, the influence of many open-source tools has grown tremendously, helping tens of thousands of life scientists in the process. As creators of successful open-source bioimage analysis software, we here discuss the motivations that can initiate development of a new tool, the common challenges faced, and the characteristics required for achieving success.

Year of Publication
2021
Journal
F1000Res
Volume
10
Pages
302
Date Published
2021
ISSN
2046-1402
DOI
10.12688/f1000research.52531.1
PubMed ID
34249339
PubMed Central ID
PMC8226416
Links
Grant list
P41 GM135019 / GM / NIGMS NIH HHS / United States