Critical assessment of protein intrinsic disorder prediction.
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Abstract | Intrinsically disordered proteins, defying the traditional protein structure-function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is high. The Critical Assessment of protein Intrinsic Disorder prediction (CAID) experiment was established as a community-based blind test to determine the state of the art in prediction of intrinsically disordered regions and the subset of residues involved in binding. A total of 43 methods were evaluated on a dataset of 646 proteins from DisProt. The best methods use deep learning techniques and notably outperform physicochemical methods. The top disorder predictor has F = 0.483 on the full dataset and F = 0.792 following filtering out of bona fide structured regions. Disordered binding regions remain hard to predict, with F = 0.231. Interestingly, computing times among methods can vary by up to four orders of magnitude. |
Year of Publication | 2021
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Journal | Nat Methods
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Volume | 18
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Issue | 5
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Pages | 472-481
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Date Published | 2021 05
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ISSN | 1548-7105
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DOI | 10.1038/s41592-021-01117-3
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PubMed ID | 33875885
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PubMed Central ID | PMC8105172
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Grant list | R01 GM089753 / GM / NIGMS NIH HHS / United States
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