Secondary findings from clinical genomic sequencing: prevalence, patient perspectives, family history assessment, and health-care costs from a multisite study.

Genet Med
Authors
Keywords
Abstract

PURPOSE: Clinical sequencing emerging in health care may result in secondary findings (SFs).

METHODS: Seventy-four of 6240 (1.2%) participants who underwent genome or exome sequencing through the Clinical Sequencing Exploratory Research (CSER) Consortium received one or more SFs from the original American College of Medical Genetics and Genomics (ACMG) recommended 56 gene-condition pair list; we assessed clinical and psychosocial actions.

RESULTS: The overall adjusted prevalence of SFs in the ACMG 56 genes across the CSER consortium was 1.7%. Initially 32% of the family histories were positive, and post disclosure, this increased to 48%. The average cost of follow-up medical actions per finding up to a 1-year period was $128 (observed, range: $0-$678) and $421 (recommended, range: $141-$1114). Case reports revealed variability in the frequency of and follow-up on medical recommendations patients received associated with each SF gene-condition pair. Participants did not report adverse psychosocial impact associated with receiving SFs; this was corroborated by 18 participant (or parent) interviews. All interviewed participants shared findings with relatives and reported that relatives did not pursue additional testing or care.

CONCLUSION: Our results suggest that disclosure of SFs shows little to no adverse impact on participants and adds only modestly to near-term health-care costs; additional studies are needed to confirm these findings.

Year of Publication
2019
Journal
Genet Med
Volume
21
Issue
5
Pages
1100-1110
Date Published
2019 05
ISSN
1530-0366
DOI
10.1038/s41436-018-0308-x
PubMed ID
30287922
PubMed Central ID
PMC6450774
Links
Grant list
U01 HG006546 / HG / NHGRI NIH HHS / United States
RF1 AG047866 / AG / NIA NIH HHS / United States
T15 LM007442 / LM / NLM NIH HHS / United States
ZIA HG200359-09 / ImNIH / Intramural NIH HHS / United States
ZIA HG200387-04 / ImNIH / Intramural NIH HHS / United States
U01 HG006507 / HG / NHGRI NIH HHS / United States
U01 HG006485 / HG / NHGRI NIH HHS / United States
U24 HG007307 / HG / NHGRI NIH HHS / United States
K01 HG009173 / HG / NHGRI NIH HHS / United States
U01 HG010233 / HG / NHGRI NIH HHS / United States
U01 HG006500 / HG / NHGRI NIH HHS / United States
UM1 HG007301 / HG / NHGRI NIH HHS / United States
U01 HG007307 / HG / NHGRI NIH HHS / United States
IK2 CX001262 / CX / CSRD VA / United States
U01 HG007301 / HG / NHGRI NIH HHS / United States
UM1 HG007292 / HG / NHGRI NIH HHS / United States
R01 CA154517 / CA / NCI NIH HHS / United States
U01 HG006487 / HG / NHGRI NIH HHS / United States
U01 HG006492 / HG / NHGRI NIH HHS / United States