CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools.
ArXiv
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Abstract | CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler-plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency-heavy. Here, we present an upgraded CellProfiler-plugins repository, an example of accessing containerized tools, improved documentation, and added citation/reference tools to facilitate the use and contribution of the community. |
Year of Publication | 2023
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Journal | ArXiv
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Date Published | 08/2023
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ISSN | 2331-8422
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PubMed ID | 37645041
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