Global identification of SWI/SNF targets reveals compensation by EP400.
Authors | |
Keywords | |
Abstract | Mammalian SWI/SNF chromatin remodeling complexes move and evict nucleosomes at gene promoters and enhancers to modulate DNA access. Although SWI/SNF subunits are commonly mutated in disease, therapeutic options are limited by our inability to predict SWI/SNF gene targets and conflicting studies on functional significance. Here, we leverage a fast-acting inhibitor of SWI/SNF remodeling to elucidate direct targets and effects of SWI/SNF. Blocking SWI/SNF activity causes a rapid and global loss of chromatin accessibility and transcription. Whereas repression persists at most enhancers, we uncover a compensatory role for the EP400/TIP60 remodeler, which reestablishes accessibility at most promoters during prolonged loss of SWI/SNF. Indeed, we observe synthetic lethality between EP400 and SWI/SNF in cancer cell lines and human cancer patient data. Our data define a set of molecular genomic features that accurately predict gene sensitivity to SWI/SNF inhibition in diverse cancer cell lines, thereby improving the therapeutic potential of SWI/SNF inhibitors. |
Year of Publication | 2023
|
Journal | Cell
|
Volume | 186
|
Issue | 24
|
Pages | 5290-5307.e26
|
Date Published | 11/2023
|
ISSN | 1097-4172
|
DOI | 10.1016/j.cell.2023.10.006
|
PubMed ID | 37922899
|
Links |