An in vitro translation, selection and amplification system for peptide nucleic acids.
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Abstract | Methods to evolve synthetic, rather than biological, polymers could significantly expand the functional potential of polymers that emerge from in vitro evolution. Requirements for synthetic polymer evolution include (i) sequence-specific polymerization of synthetic building blocks on an amplifiable template, (ii) display of the newly translated polymer strand in a manner that allows it to adopt folded structures, (iii) selection of synthetic polymer libraries for desired binding or catalytic properties and (iv) amplification of template sequences that survive selection in a manner that allows subsequent translation. Here we report the development of such a system for peptide nucleic acids (PNAs) using a set of 12 PNA pentamer building blocks. We validated the system by performing six iterated cycles of translation, selection and amplification on a library of 4.3 x 10(8) PNA-encoding DNA templates and observed >1,000,000-fold overall enrichment of a template encoding a biotinylated (streptavidin-binding) PNA. These results collectively provide an experimental foundation for PNA evolution in the laboratory. |
Year of Publication | 2010
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Journal | Nat Chem Biol
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Volume | 6
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Issue | 2
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Pages | 148-55
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Date Published | 2010 Feb
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ISSN | 1552-4469
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DOI | 10.1038/nchembio.280
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PubMed ID | 20081830
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PubMed Central ID | PMC2808706
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Grant list | R01GM065865 / GM / NIGMS NIH HHS / United States
R01 GM065865-03 / GM / NIGMS NIH HHS / United States
R01 GM065865-05A1 / GM / NIGMS NIH HHS / United States
R01 GM065865-02 / GM / NIGMS NIH HHS / United States
R01 GM065865-01A2 / GM / NIGMS NIH HHS / United States
Howard Hughes Medical Institute / United States
R01 GM065865-06 / GM / NIGMS NIH HHS / United States
R01 GM065865 / GM / NIGMS NIH HHS / United States
R01 GM065865-04 / GM / NIGMS NIH HHS / United States
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