An in vitro translation, selection and amplification system for peptide nucleic acids.

Nat Chem Biol
Authors
Keywords
Abstract

Methods to evolve synthetic, rather than biological, polymers could significantly expand the functional potential of polymers that emerge from in vitro evolution. Requirements for synthetic polymer evolution include (i) sequence-specific polymerization of synthetic building blocks on an amplifiable template, (ii) display of the newly translated polymer strand in a manner that allows it to adopt folded structures, (iii) selection of synthetic polymer libraries for desired binding or catalytic properties and (iv) amplification of template sequences that survive selection in a manner that allows subsequent translation. Here we report the development of such a system for peptide nucleic acids (PNAs) using a set of 12 PNA pentamer building blocks. We validated the system by performing six iterated cycles of translation, selection and amplification on a library of 4.3 x 10(8) PNA-encoding DNA templates and observed >1,000,000-fold overall enrichment of a template encoding a biotinylated (streptavidin-binding) PNA. These results collectively provide an experimental foundation for PNA evolution in the laboratory.

Year of Publication
2010
Journal
Nat Chem Biol
Volume
6
Issue
2
Pages
148-55
Date Published
2010 Feb
ISSN
1552-4469
DOI
10.1038/nchembio.280
PubMed ID
20081830
PubMed Central ID
PMC2808706
Links
Grant list
R01GM065865 / GM / NIGMS NIH HHS / United States
R01 GM065865-03 / GM / NIGMS NIH HHS / United States
R01 GM065865-05A1 / GM / NIGMS NIH HHS / United States
R01 GM065865-02 / GM / NIGMS NIH HHS / United States
R01 GM065865-01A2 / GM / NIGMS NIH HHS / United States
Howard Hughes Medical Institute / United States
R01 GM065865-06 / GM / NIGMS NIH HHS / United States
R01 GM065865 / GM / NIGMS NIH HHS / United States
R01 GM065865-04 / GM / NIGMS NIH HHS / United States