Directed evolution of ligand dependence: small-molecule-activated protein splicing.

Proc Natl Acad Sci U S A
Authors
Keywords
Abstract

Artificial molecular switches that modulate protein activities in response to synthetic small molecules would serve as tools for exerting temporal and dose-dependent control over protein function. Self-splicing protein elements (inteins) are attractive starting points for the creation of such switches, because their insertion into a protein blocks the target protein's function until splicing occurs. Natural inteins, however, are not known to be regulated by small molecules. We evolved an intein-based molecular switch that transduces binding of a small molecule into the activation of an arbitrary protein of interest. Simple insertion of a natural ligand-binding domain into a minimal intein destroys splicing activity. To restore activity in a ligand-dependent manner, we linked protein splicing to cell survival or fluorescence in Saccharomyces cerevisiae. Iterated cycles of mutagenesis and selection yielded inteins with strong splicing activities that highly depend on 4-hydroxytamoxifen. Insertion of an evolved intein into four unrelated proteins in living cells revealed that ligand-dependent activation of protein function is general, fairly rapid, dose-dependent, and posttranslational. Our directed-evolution approach therefore evolved small-molecule dependence in a protein and also created a general tool for modulating the function of arbitrary proteins in living cells with a single cell-permeable, synthetic small molecule.

Year of Publication
2004
Journal
Proc Natl Acad Sci U S A
Volume
101
Issue
29
Pages
10505-10
Date Published
2004 Jul 20
ISSN
0027-8424
DOI
10.1073/pnas.0402762101
PubMed ID
15247421
PubMed Central ID
PMC489967
Links
Grant list
R01 GM065400 / GM / NIGMS NIH HHS / United States
R01GM065400 / GM / NIGMS NIH HHS / United States