Nature of amide carbonyl--carbonyl interactions in proteins.
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Abstract | Noncovalent interactions define and modulate biomolecular structure, function, and dynamics. In many protein secondary structures, an intimate interaction exists between adjacent carbonyl groups of the main-chain amide bonds. As this short contact contributes to the energetics of protein conformational stability as well as protein-ligand interactions, understanding its nature is crucial. The intimacy of the carbonyl groups could arise from a charge-charge or dipole-dipole interaction, or n-->pi * electronic delocalization. This last putative origin, which is reminiscent of the Burgi-Dunitz trajectory, involves delocalization of the lone pairs (n) of the oxygen (O(i-1)) of a peptide bond over the antibonding orbital (pi*) of the carbonyl group (C(i)=O(i)) of the subsequent peptide bond. By installing isosteric chemical substituents in a peptidic model system and using NMR spectroscopy, X-ray diffraction analysis, and ab initio calculations to analyze the consequences, the intimate interaction between adjacent carbonyl groups is shown to arise primarily from n-->pi* electronic delocalization. This finding has implications for organic, biological, and medicinal chemistry. |
Year of Publication | 2009
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Journal | J Am Chem Soc
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Volume | 131
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Issue | 21
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Pages | 7244-6
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Date Published | 2009 Jun 03
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ISSN | 1520-5126
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DOI | 10.1021/ja901188y
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PubMed ID | 19469574
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PubMed Central ID | PMC2811422
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Grant list | R01 AR044276 / AR / NIAMS NIH HHS / United States
R01 AR044276-13 / AR / NIAMS NIH HHS / United States
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