Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy.

Nat Biotechnol
Authors
Keywords
Abstract

Expansion microscopy (ExM), a method for improving the resolution of light microscopy by physically expanding a specimen, has not been applied to clinical tissue samples. Here we report a clinically optimized form of ExM that supports nanoscale imaging of human tissue specimens that have been fixed with formalin, embedded in paraffin, stained with hematoxylin and eosin, and/or fresh frozen. The method, which we call expansion pathology (ExPath), converts clinical samples into an ExM-compatible state, then applies an ExM protocol with protein anchoring and mechanical homogenization steps optimized for clinical samples. ExPath enables ∼70-nm-resolution imaging of diverse biomolecules in intact tissues using conventional diffraction-limited microscopes and standard antibody and fluorescent DNA in situ hybridization reagents. We use ExPath for optical diagnosis of kidney minimal-change disease, a process that previously required electron microscopy, and we demonstrate high-fidelity computational discrimination between early breast neoplastic lesions for which pathologists often disagree in classification. ExPath may enable the routine use of nanoscale imaging in pathology and clinical research.

Year of Publication
2017
Journal
Nat Biotechnol
Volume
35
Issue
8
Pages
757-764
Date Published
2017 Aug
ISSN
1546-1696
DOI
10.1038/nbt.3892
PubMed ID
28714966
PubMed Central ID
PMC5548617
Links
Grant list
R21 CA187642 / CA / NCI NIH HHS / United States
U01 MH106011 / MH / NIMH NIH HHS / United States
R01 EY023173 / EY / NEI NIH HHS / United States
R01 GM104948 / GM / NIGMS NIH HHS / United States
DP1 NS087724 / NS / NINDS NIH HHS / United States
UL1 TR001102 / TR / NCATS NIH HHS / United States
R01 MH110932 / MH / NIMH NIH HHS / United States