Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline.

Mol Cell Proteomics
Authors
Abstract

To address the growing need for a centralized, community resource of published results processed with Skyline, and to provide reviewers and readers immediate visual access to the data behind published conclusions, we present Panorama Public (), a repository of Skyline documents supporting published results. Panorama Public is built on Panorama, an open source data management system for mass spectrometry data processed with the Skyline targeted mass spectrometry environment. The Panorama web application facilitates viewing, sharing, and disseminating results contained in Skyline documents via a web-browser. Skyline users can easily upload their documents to a Panorama server and allow other researchers to explore uploaded results in the Panorama web-interface through a variety of familiar summary graphs as well as annotated views of the chromatographic peaks processed with Skyline. This makes Panorama ideal for sharing targeted, quantitative results contained in Skyline documents with collaborators, reviewers, and the larger proteomics community. The Panorama Public repository employs the full data visualization capabilities of Panorama which facilitates sharing results with reviewers during manuscript review.

Year of Publication
2018
Journal
Mol Cell Proteomics
Volume
17
Issue
6
Pages
1239-1244
Date Published
2018 Jun
ISSN
1535-9484
DOI
10.1074/mcp.RA117.000543
PubMed ID
29487113
PubMed Central ID
PMC5986241
Links
Grant list
R01 AR071762 / AR / NIAMS NIH HHS / United States
R01 GM103551 / GM / NIGMS NIH HHS / United States
R01 GM121696 / GM / NIGMS NIH HHS / United States
U54 HG008097 / HG / NHGRI NIH HHS / United States