Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming.

Cell Stem Cell
Authors
Keywords
Abstract

Cellular reprogramming converts differentiated cells into induced pluripotent stem cells (iPSCs). However, this process is typically very inefficient, complicating mechanistic studies. We identified and molecularly characterized rare, early intermediates poised to reprogram with up to 95% efficiency, without perturbing additional genes or pathways, during iPSC generation from mouse embryonic fibroblasts. Analysis of these cells uncovered transcription factors (e.g., Tfap2c and Bex2) that are important for reprogramming but dispensable for pluripotency maintenance. Additionally, we observed striking patterns of chromatin hyperaccessibility at pluripotency loci, which preceded gene expression in poised intermediates. Finally, inspection of these hyperaccessible regions revealed an early wave of DNA demethylation that is uncoupled from de novo methylation of somatic regions late in reprogramming. Our study underscores the importance of investigating rare intermediates poised to produce iPSCs, provides insights into reprogramming mechanisms, and offers a valuable resource for the dissection of transcriptional and epigenetic dynamics intrinsic to cell fate change.

Year of Publication
2018
Journal
Cell Stem Cell
Volume
23
Issue
2
Pages
289-305.e5
Date Published
2018 Aug 02
ISSN
1875-9777
DOI
10.1016/j.stem.2018.06.013
PubMed ID
30017590
PubMed Central ID
PMC6086589
Links
Grant list
P30 DK040561 / DK / NIDDK NIH HHS / United States
P01 GM099117 / NIGMS NIH HHS / National Institute of General Medical Sciences / United States
P01 GM099134 / GM / NIGMS NIH HHS / United States
R01 HD058013 / HD / NICHD NIH HHS / United States
P50 HG006193 / NHGRI NIH HHS / National Human Genome Research Institute / United States