A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Nat Chem Biol
Authors
Abstract

We developed a new way to engineer complex proteins toward multidimensional specifications using a simple, yet scalable, directed evolution strategy. By robotically picking mammalian cells that were identified, under a microscope, as expressing proteins that simultaneously exhibit several specific properties, we can screen hundreds of thousands of proteins in a library in just a few hours, evaluating each along multiple performance axes. To demonstrate the power of this approach, we created a genetically encoded fluorescent voltage indicator, simultaneously optimizing its brightness and membrane localization using our microscopy-guided cell-picking strategy. We produced the high-performance opsin-based fluorescent voltage reporter Archon1 and demonstrated its utility by imaging spiking and millivolt-scale subthreshold and synaptic activity in acute mouse brain slices and in larval zebrafish in vivo. We also measured postsynaptic responses downstream of optogenetically controlled neurons in C. elegans.

Year of Publication
2018
Journal
Nat Chem Biol
Volume
14
Issue
4
Pages
352-360
Date Published
2018 04
ISSN
1552-4469
DOI
10.1038/s41589-018-0004-9
PubMed ID
29483642
PubMed Central ID
PMC5866759
Links
Grant list
U01 NS099691 / NS / NINDS NIH HHS / United States
R01 DA029639 / DA / NIDA NIH HHS / United States
R24 MH106075 / MH / NIMH NIH HHS / United States
R01 MH103910 / MH / NIMH NIH HHS / United States
R01 EY023173 / EY / NEI NIH HHS / United States
R01 GM104948 / GM / NIGMS NIH HHS / United States
R01 NS087950 / NS / NINDS NIH HHS / United States
DP1 NS087724 / NS / NINDS NIH HHS / United States
R43 MH109332 / MH / NIMH NIH HHS / United States
R01 NS104892 / NS / NINDS NIH HHS / United States