An epigenetic mechanism of resistance to targeted therapy in T cell acute lymphoblastic leukemia.

Nat Genet
Authors
Keywords
Abstract

The identification of activating NOTCH1 mutations in T cell acute lymphoblastic leukemia (T-ALL) led to clinical testing of γ-secretase inhibitors (GSIs) that prevent NOTCH1 activation. However, responses to these inhibitors have been transient, suggesting that resistance limits their clinical efficacy. Here we modeled T-ALL resistance, identifying GSI-tolerant 'persister' cells that expand in the absence of NOTCH1 signaling. Rare persisters are already present in naive T-ALL populations, and the reversibility of their phenotype suggests an epigenetic mechanism. Relative to GSI-sensitive cells, persister cells activate distinct signaling and transcriptional programs and exhibit chromatin compaction. A knockdown screen identified chromatin regulators essential for persister viability, including BRD4. BRD4 binds enhancers near critical T-ALL genes, including MYC and BCL2. The BRD4 inhibitor JQ1 downregulates expression of these targets and induces growth arrest and apoptosis in persister cells, at doses well tolerated by GSI-sensitive cells. Consistently, the GSI-JQ1 combination was found to be effective against primary human leukemias in vivo. Our findings establish a role for epigenetic heterogeneity in leukemia resistance that may be addressed by incorporating epigenetic modulators in combination therapy.

Year of Publication
2014
Journal
Nat Genet
Volume
46
Issue
4
Pages
364-70
Date Published
2014 Apr
ISSN
1546-1718
URL
DOI
10.1038/ng.2913
PubMed ID
24584072
PubMed Central ID
PMC4086945
Links
Grant list
U54 HG006991 / HG / NHGRI NIH HHS / United States
T32 HL007574 / HL / NHLBI NIH HHS / United States
CA096899 / CA / NCI NIH HHS / United States
P01 CA109901 / CA / NCI NIH HHS / United States
R01 CA096899 / CA / NCI NIH HHS / United States
T32 HL007627 / HL / NHLBI NIH HHS / United States
P30 CA034196 / CA / NCI NIH HHS / United States
5P01 CA109901-10 / CA / NCI NIH HHS / United States
U54 HG004570 / HG / NHGRI NIH HHS / United States
Howard Hughes Medical Institute / United States
T32 CA130807 / CA / NCI NIH HHS / United States
U01 ES017155 / ES / NIEHS NIH HHS / United States