Variant Review with the Integrative Genomics Viewer.

Cancer Res
Authors
Keywords
Abstract

Manual review of aligned reads for confirmation and interpretation of variant calls is an important step in many variant calling pipelines for next-generation sequencing (NGS) data. Visual inspection can greatly increase the confidence in calls, reduce the risk of false positives, and help characterize complex events. The Integrative Genomics Viewer (IGV) was one of the first tools to provide NGS data visualization, and it currently provides a rich set of tools for inspection, validation, and interpretation of NGS datasets, as well as other types of genomic data. Here, we present a short overview of IGV's variant review features for both single-nucleotide variants and structural variants, with examples from both cancer and germline datasets. IGV is freely available at .

Year of Publication
2017
Journal
Cancer Res
Volume
77
Issue
21
Pages
e31-e34
Date Published
2017 11 01
ISSN
1538-7445
DOI
10.1158/0008-5472.CAN-17-0337
PubMed ID
29092934
PubMed Central ID
PMC5678989
Links
Grant list
R01 CA157304 / CA / NCI NIH HHS / United States
U24 CA210004 / CA / NCI NIH HHS / United States