Single Guide RNA Library Design and Construction.

Cold Spring Harb Protoc
Authors
Keywords
Abstract

This protocol describes how to generate a single guide RNA (sgRNA) library for use in genetic screens. There are many online tools available for predicting sgRNA sequences with high target specificity and/or cleavage activity. Here, we refer the user to genome-wide sgRNA sequence predictions that we have developed for both the human and mouse and that are available from the Ó³»­´«Ã½ website. Once a set of target genes and corresponding sgRNA sequences has been identified, customized oligonucleotide pools can be rapidly synthesized by a number of commercial vendors. Thereafter, as described here, the oligonucleotides can be efficiently cloned into an appropriate lentiviral expression vector backbone. The resulting plasmid pool can then be packaged into lentiviral particles and used to generate knockouts in any cell line of choice.

Year of Publication
2016
Journal
Cold Spring Harb Protoc
Volume
2016
Issue
3
Pages
pdb.prot090803
Date Published
2016 Mar 01
ISSN
1559-6095
URL
DOI
10.1101/pdb.prot090803
PubMed ID
26933249
PubMed Central ID
PMC4804709
Links
Grant list
F31 CA189437 / CA / NCI NIH HHS / United States
R01 CA103866 / CA / NCI NIH HHS / United States
Additional Materials