Immunogenetics. Chromatin state dynamics during blood formation.

Science
Authors
Keywords
Abstract

Chromatin modifications are crucial for development, yet little is known about their dynamics during differentiation. Hematopoiesis provides a well-defined model to study chromatin state dynamics; however, technical limitations impede profiling of homogeneous differentiation intermediates. We developed a high-sensitivity indexing-first chromatin immunoprecipitation approach to profile the dynamics of four chromatin modifications across 16 stages of hematopoietic differentiation. We identify 48,415 enhancer regions and characterize their dynamics. We find that lineage commitment involves de novo establishment of 17,035 lineage-specific enhancers. These enhancer repertoire expansions foreshadow transcriptional programs in differentiated cells. Combining our enhancer catalog with gene expression profiles, we elucidate the transcription factor network controlling chromatin dynamics and lineage specification in hematopoiesis. Together, our results provide a comprehensive model of chromatin dynamics during development.

Year of Publication
2014
Journal
Science
Volume
345
Issue
6199
Pages
943-9
Date Published
2014 Aug 22
ISSN
1095-9203
DOI
10.1126/science.1256271
PubMed ID
25103404
PubMed Central ID
PMC4412442
Links
Grant list
340712 / European Research Council / International
P50 HG006193 / HG / NHGRI NIH HHS / United States
1P50HG006193 / HG / NHGRI NIH HHS / United States