Lipson M, Loh PR, Sankararaman S, Patterson N, Berger B, Reich D. Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes. PLoS Genet. 2015;11(11):e1005550. doi:10.1371/journal.pgen.1005550
Reich DE, Schaffner SF, Daly MJ, et al. Human genome sequence variation and the influence of gene history, mutation and recombination. Nat Genet. 2002;32(1):135-42. doi:10.1038/ng947
Lun DS, Rockwell G, Guido NJ, et al. Large-scale identification of genetic design strategies using local search. Mol Syst Biol. 2009;5:296. doi:10.1038/msb.2009.57
Margulies EH, Cooper GM, Asimenos G, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007;17(6):760-74. doi:10.1101/gr.6034307
Patterson NJ. How old is the most recent ancestor of two copies of an allele?. Genetics. 2005;169(2):1093-104. doi:10.1534/genetics.103.015768
Rasmussen MD, Kellis M. Unified modeling of gene duplication, loss, and coalescence using a locus tree. Genome Res. 2012;22(4):755-65. doi:10.1101/gr.123901.111
H Y Jiang R, de Bruijn I, Haas BJ, et al. Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PLoS Genet. 2013;9(6):e1003272. doi:10.1371/journal.pgen.1003272
Carbone L, Harris A, Gnerre S, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 2014;513(7517):195-201. doi:10.1038/nature13679
Sadd BM, Barribeau SM, Bloch G, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 2015;16:76. doi:10.1186/s13059-015-0623-3
Lozovsky ER, Chookajorn T, Brown KM, et al. Stepwise acquisition of pyrimethamine resistance in the malaria parasite. Proc Natl Acad Sci U S A. 2009;106(29):12025-30. doi:10.1073/pnas.0905922106