Brinsmade SR, Alexander EL, Livny J, et al. Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY. Proc Natl Acad Sci U S A. 2014;111(22):8227-32. doi:10.1073/pnas.1321308111
Franzosa EA, Morgan XC, Segata N, et al. Relating the metatranscriptome and metagenome of the human gut. Proc Natl Acad Sci U S A. 2014;111(22):E2329-38. doi:10.1073/pnas.1319284111
Serra CR, Earl AM, Barbosa TM, Kolter R, Henriques AO. Sporulation during growth in a gut isolate of Bacillus subtilis. J Bacteriol. 2014;196(23):4184-96. doi:10.1128/JB.01993-14
Livny J, Zhou X, Mandlik A, Hubbard T, Davis BM, Waldor MK. Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection. Nucleic Acids Res. 2014;42(19):12212-23. doi:10.1093/nar/gku891
Greene SE, Pinkner JS, Chorell E, et al. Pilicide ec240 disrupts virulence circuits in uropathogenic Escherichia coli. MBio. 2014;5(6):e02038. doi:10.1128/mBio.02038-14
Minch KJ, Rustad TR, Peterson EJR, et al. The DNA-binding network of Mycobacterium tuberculosis. Nat Commun. 2015;6:5829. doi:10.1038/ncomms6829
Quivey RG, Grayhack EJ, Faustoferri RC, et al. Functional profiling in Streptococcus mutans: construction and examination of a genomic collection of gene deletion mutants. Mol Oral Microbiol. 2015;30(6):474-95. doi:10.1111/omi.12107
Mandlik A, Livny J, Robins WP, Ritchie JM, Mekalanos JJ, Waldor MK. RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe. 2011;10(2):165-74. doi:10.1016/j.chom.2011.07.007
T Y Chan C, Lee JW, Cameron E, Bashor CJ, Collins JJ. ’Deadman’ and ’Passcode’ microbial kill switches for bacterial containment. Nat Chem Biol. 2016;12(2):82-6. doi:10.1038/nchembio.1979