Margulies EH, Cooper GM, Asimenos G, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007;17(6):760-74. doi:10.1101/gr.6034307
Fields AP, Rodriguez EH, Jovanovic M, et al. A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. Mol Cell. 2015;60(5):816-27. doi:10.1016/j.molcel.2015.11.013
Neafsey DE, Galagan JE. Dual modes of natural selection on upstream open reading frames. Mol Biol Evol. 2007;24(8):1744-51. doi:10.1093/molbev/msm093
Kaminski J, Gibson MK, Franzosa EA, Segata N, Dantas G, Huttenhower C. High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PLoS Comput Biol. 2015;11(12):e1004557. doi:10.1371/journal.pcbi.1004557
Galagan JE, Calvo SE, Cuomo C, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 2005;438(7071):1105-15. doi:10.1038/nature04341
Salinas F, de Boer CG, Abarca V, et al. Natural variation in non-coding regions underlying phenotypic diversity in budding yeast. Sci Rep. 2016;6:21849. doi:10.1038/srep21849
Duong V, Simmons C, Gavotte L, et al. Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia. Infect Genet Evol. 2013;15:59-68. doi:10.1016/j.meegid.2011.06.019
Nuvolone M, Hermann M, Sorce S, et al. Strictly co-isogenic C57BL/6J-Prnp-/- mice: A rigorous resource for prion science. J Exp Med. 2016;213(3):313-27. doi:10.1084/jem.20151610
Kuntzen T, Berical A, Ndjomou J, et al. A set of reference sequences for the hepatitis C genotypes 4d, 4f, and 4k covering the full open reading frame. J Med Virol. 2008;80(8):1370-8. doi:10.1002/jmv.21240
Ma J, Diedrich JK, Jungreis I, et al. Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides. Anal Chem. 2016;88(7):3967-75. doi:10.1021/acs.analchem.6b00191