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An image analysis toolbox for high-throughput C. elegans assays.

Wählby C, Kamentsky L, Liu ZH, et al. An image analysis toolbox for high-throughput C. elegans assays. Nat Methods. 2012;9(7):714-6. doi:10.1038/nmeth.1984

CELLCOUNTER: novel open-source software for counting cell migration and invasion in vitro.

Li X, Yang H, Huang H, Zhu T. CELLCOUNTER: novel open-source software for counting cell migration and invasion in vitro. Biomed Res Int. 2014;2014:863564. doi:10.1155/2014/863564

Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification.

Logan DJ, Shan J, Bhatia SN, Carpenter AE. Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification. Methods. 2016;96:6-11. doi:10.1016/j.ymeth.2015.12.002

CP-CHARM: segmentation-free image classification made accessible.

Uhlmann V, Singh S, Carpenter AE. CP-CHARM: segmentation-free image classification made accessible. BMC Bioinformatics. 2016;17:51. doi:10.1186/s12859-016-0895-y

Iterative template refinement: protein-fold prediction using iterative search and hybrid sequence/structure templates.

Yi TM, Lander ES. Iterative template refinement: protein-fold prediction using iterative search and hybrid sequence/structure templates. Methods Enzymol. 1996;266:322-39.