Geiser DM, Aoki T, Bacon CW, et al. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. 2013;103(5):400-8. doi:10.1094/PHYTO-07-12-0150-LE
Weiss ER, Lamers SL, Henderson JL, et al. Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection. J Virol. 2018;92(2). doi:10.1128/JVI.01466-17
Margulies EH, Cooper GM, Asimenos G, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007;17(6):760-74. doi:10.1101/gr.6034307
Thai KTD, Henn MR, Zody MC, et al. High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections. J Virol. 2012;86(2):835-43. doi:10.1128/JVI.05985-11
Rasmussen MD, Kellis M. Unified modeling of gene duplication, loss, and coalescence using a locus tree. Genome Res. 2012;22(4):755-65. doi:10.1101/gr.123901.111
Sankararaman S, Mallick S, Dannemann M, et al. The genomic landscape of Neanderthal ancestry in present-day humans. Nature. 2014;507(7492):354-7. doi:10.1038/nature12961
Ahola V, Lehtonen R, Somervuo P, et al. The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nat Commun. 2014;5:4737. doi:10.1038/ncomms5737
Rock JM, Lang UF, Chase MR, et al. DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader. Nat Genet. 2015;47(6):677-81. doi:10.1038/ng.3269
Mathee K, Narasimhan G, Valdes C, et al. Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 2008;105(8):3100-5. doi:10.1073/pnas.0711982105
Williams AH, Sharma M, Thatcher LF, et al. Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. BMC Genomics. 2016;17:191. doi:10.1186/s12864-016-2486-8