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Sequencing and comparison of yeast species to identify genes and regulatory elements.

Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature. 2003;423(6937):241-54. doi:10.1038/nature01644

Understanding gene sequence variation in the context of transcription regulation in yeast.

Gat-Viks I, Meller R, Kupiec M, Shamir R. Understanding gene sequence variation in the context of transcription regulation in yeast. PLoS Genet. 2010;6(1):e1000800. doi:10.1371/journal.pgen.1000800

Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants.

Madhani HD, Galitski T, Lander ES, Fink GR. Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. Proc Natl Acad Sci U S A. 1999;96(22):12530-5.

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae.

Kellis M, Birren BW, Lander ES. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature. 2004;428(6983):617-24. doi:10.1038/nature02424

Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling.

McDonald RI, Guilinger JP, Mukherji S, Curtis EA, Lee WI, Liu DR. Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling. Nat Chem Biol. 2014;10(12):1049-54. doi:10.1038/nchembio.1655

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, et al. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol Cell Proteomics. 2010;9(2):225-41. doi:10.1074/mcp.M900223-MCP200

Discovery of a mRNA mitochondrial localization element in Saccharomyces cerevisiae by nonhomologous random recombination and in vivo selection.

Liu JM, Liu DR. Discovery of a mRNA mitochondrial localization element in Saccharomyces cerevisiae by nonhomologous random recombination and in vivo selection. Nucleic Acids Res. 2007;35(20):6750-61. doi:10.1093/nar/gkm777

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

Paulovich AG, Billheimer D, Ham AJL, et al. Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Mol Cell Proteomics. 2010;9(2):242-54. doi:10.1074/mcp.M900222-MCP200

Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination.

Doyon JB, Liu DR. Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination. Nucleic Acids Res. 2007;35(17):5851-60. doi:10.1093/nar/gkm634

Parametric modeling of cellular state transitions as measured with flow cytometry.

Ho HJ, Lin TI, Chang HH, Haase SB, Huang S, Pyne S. Parametric modeling of cellular state transitions as measured with flow cytometry. BMC Bioinformatics. 2012;13 Suppl 5:S5. doi:10.1186/1471-2105-13-S5-S5