Margulies EH, Cooper GM, Asimenos G, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res. 2007;17(6):760-74. doi:10.1101/gr.6034307
Nishimasu H, Ran A, Hsu PD, et al. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell. 2014;156(5):935-49. doi:10.1016/j.cell.2014.02.001
Mathee K, Narasimhan G, Valdes C, et al. Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 2008;105(8):3100-5. doi:10.1073/pnas.0711982105
Doyon JB, Liu DR. Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination. Nucleic Acids Res. 2007;35(17):5851-60. doi:10.1093/nar/gkm634
Xie X, Kamal M, Lander ES. A family of conserved noncoding elements derived from an ancient transposable element. Proc Natl Acad Sci U S A. 2006;103(31):11659-64. doi:10.1073/pnas.0604768103
Ordulu Z, Wong KE, Currall BB, et al. Describing sequencing results of structural chromosome rearrangements with a suggested next-generation cytogenetic nomenclature. Am J Hum Genet. 2014;94(5):695-709. doi:10.1016/j.ajhg.2014.03.020
Orsi RH, Borowsky ML, Lauer P, et al. Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics. 2008;9:539. doi:10.1186/1471-2164-9-539
Buskirk AR, Kehayova PD, Landrigan A, Liu DR. In vivo evolution of an RNA-based transcriptional activator. Chem Biol. 2003;10(6):533-40.
Engels R, Yu T, Burge C, Mesirov JP, DeCaprio D, Galagan JE. Combo: a whole genome comparative browser. Bioinformatics. 2006;22(14):1782-3. doi:10.1093/bioinformatics/btl193
Gymrek M. PyBamView: a browser-based application for viewing short read alignments. Bioinformatics. 2014;30(23):3405-7. doi:10.1093/bioinformatics/btu565