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Imaging Platform

A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.

Jolly AL, Luan CH, Dusel BE, et al. A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells. Cell Rep. 2016;14(3):611-20. doi:10.1016/j.celrep.2015.12.051

Label-free cell cycle analysis for high-throughput imaging flow cytometry.

Blasi T, Hennig H, Summers HD, et al. Label-free cell cycle analysis for high-throughput imaging flow cytometry. Nat Commun. 2016;7:10256. doi:10.1038/ncomms10256

Automating Morphological Profiling with Generic Deep Convolutional Networks.

Pawlowski N, Caicedo J, Singh S, Carpenter A, Storkey A. Automating Morphological Profiling with Generic Deep Convolutional Networks. bioRxiV. 2016. doi:10.1101/085118

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data.

Bray MA, Carpenter AE. CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data. BMC Bioinformatics. 2015;16:368. doi:10.1186/s12859-015-0759-x

CDy6, a photostable probe for long-term real-time visualization of mitosis and proliferating cells.

Jeong YM, Duanting Z, Hennig H, et al. CDy6, a photostable probe for long-term real-time visualization of mitosis and proliferating cells. Chem Biol. 2015;22(2):299-307. doi:10.1016/j.chembiol.2014.11.018

Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images.

Bray MA, Vokes MS, Carpenter AE. Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images. Curr Protoc Mol Biol. 2015;109:14.17.1-13. doi:10.1002/0471142727.mb1417s109

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects.

Singh S, Wu X, Ljosa V, et al. Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects. PLoS One. 2015;10(7):e0131370. doi:10.1371/journal.pone.0131370

Crowdsourcing the creation of image segmentation algorithms for connectomics.

Arganda-Carreras I, Turaga SC, Berger DR, et al. Crowdsourcing the creation of image segmentation algorithms for connectomics. Front Neuroanat. 2015;9:142. doi:10.3389/fnana.2015.00142

Increased expression of the immune modulatory molecule PD-L1 (CD274) in anaplastic meningioma.

Du Z, Abedalthagafi M, Aizer A, et al. Increased expression of the immune modulatory molecule PD-L1 (CD274) in anaplastic meningioma. Oncotarget. 2014. http://www.impactjournals.com/oncotarget/misc/linkedout.php?pii=3082

Pipeline for illumination correction of images for high-throughput microscopy.

Singh S, Bray MA, Jones TR, Carpenter AE. Pipeline for illumination correction of images for high-throughput microscopy. J Microsc. 2014;256(3):231-6. doi:10.1111/jmi.12178