Genetic dependencies associated with transcription factor activities in human cancer cell lines.

Cell reports
Authors
Keywords
Abstract

Transcription factors (TFs) are important mediators of aberrant transcriptional programs in cancer cells. In this study, we focus on TF activity (TFa) as a biomarker for cell-line-selective anti-proliferative effects, in that high TFa predicts sensitivity to loss of function of a given gene (i.e., genetic dependencies [GDs]). Our linear-regression-based framework identifies 3,047 pan-cancer and 3,952 cancer-type-specific candidate TFa-GD associations from cell line data, which are then cross-examined for impact on survival in patient cohorts. One of the most prominent biomarkers is TEAD1 activity, whose associations with its predicted GDs are validated through experimental evidence as proof of concept. Overall, these TFa-GD associations represent an attractive resource for identifying innovative, biomarker-driven hypotheses for drug discovery programs in oncology.

Year of Publication
2024
Journal
Cell reports
Volume
43
Issue
5
Pages
114175
Date Published
04/2024
ISSN
2211-1247
DOI
10.1016/j.celrep.2024.114175
PubMed ID
38691456
Links