Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing.
Nat Methods
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Abstract | Whole-genome bisulfite sequencing (WGBS) allows genome-wide DNA methylation profiling, but the associated high sequencing costs continue to limit its widespread application. We used several high-coverage reference data sets to experimentally determine minimal sequencing requirements. We present data-derived recommendations for minimum sequencing depth for WGBS libraries, highlight what is gained with increasing coverage and discuss the trade-off between sequencing depth and number of assayed replicates. |
Year of Publication | 2015
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Journal | Nat Methods
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Volume | 12
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Issue | 3
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Pages | 230-2, 1 p following 232
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Date Published | 2015 Mar
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ISSN | 1548-7105
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URL | |
DOI | 10.1038/nmeth.3152
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PubMed ID | 25362363
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PubMed Central ID | PMC4344394
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Grant list | P01 GM099117 / GM / NIGMS NIH HHS / United States
U01 ES017155 / ES / NIEHS NIH HHS / United States
P01GM099117 / GM / NIGMS NIH HHS / United States
U01ES017155 / ES / NIEHS NIH HHS / United States
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