Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing.

Nat Methods
Authors
Keywords
Abstract

Whole-genome bisulfite sequencing (WGBS) allows genome-wide DNA methylation profiling, but the associated high sequencing costs continue to limit its widespread application. We used several high-coverage reference data sets to experimentally determine minimal sequencing requirements. We present data-derived recommendations for minimum sequencing depth for WGBS libraries, highlight what is gained with increasing coverage and discuss the trade-off between sequencing depth and number of assayed replicates.

Year of Publication
2015
Journal
Nat Methods
Volume
12
Issue
3
Pages
230-2, 1 p following 232
Date Published
2015 Mar
ISSN
1548-7105
URL
DOI
10.1038/nmeth.3152
PubMed ID
25362363
PubMed Central ID
PMC4344394
Links
Grant list
P01 GM099117 / GM / NIGMS NIH HHS / United States
U01 ES017155 / ES / NIEHS NIH HHS / United States
P01GM099117 / GM / NIGMS NIH HHS / United States
U01ES017155 / ES / NIEHS NIH HHS / United States