Lebreton F, Valentino MD, Schaufler K, Earl AM, Cattoir V, Gilmore MS. Transferable vancomycin resistance in clade B commensal-type Enterococcus faecium. J Antimicrob Chemother. 2018;73(6):1479-1486. doi:10.1093/jac/dky039
Warner DF, Rock JM, Fortune SM, Mizrahi V. DNA Replication Fidelity in the Mycobacterium tuberculosis Complex. Adv Exp Med Biol. 2017;1019:247-262. doi:10.1007/978-3-319-64371-7_13
Ribeiro FJ, Przybylski D, Yin S, et al. Finished bacterial genomes from shotgun sequence data. Genome Res. 2012;22(11):2270-7. doi:10.1101/gr.141515.112
Mathee K, Narasimhan G, Valdes C, et al. Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 2008;105(8):3100-5. doi:10.1073/pnas.0711982105
Palmer KL, Godfrey P, Griggs A, et al. Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus. MBio. 2012;3(1):e00318-11. doi:10.1128/mBio.00318-11
Blainey PC. The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol Rev. 2013;37(3):407-27. doi:10.1111/1574-6976.12015
Orsi RH, Borowsky ML, Lauer P, et al. Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics. 2008;9:539. doi:10.1186/1471-2164-9-539
Peleg AY, Miyakis S, Ward DV, et al. Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus. PLoS One. 2012;7(1):e28316. doi:10.1371/journal.pone.0028316
Galagan JE, Sisk P, Stolte C, et al. TB database 2010: overview and update. Tuberculosis (Edinb). 2010;90(4):225-35. doi:10.1016/j.tube.2010.03.010
Liong M, Hoang AN, Chung J, et al. Magnetic barcode assay for genetic detection of pathogens. Nat Commun. 2013;4:1752. doi:10.1038/ncomms2745