McAdam PR, Templeton KE, Edwards GF, et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci U S A. 2012;109(23):9107-12. doi:10.1073/pnas.1202869109
D’Souza CA, Kronstad JW, Taylor G, et al. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. MBio. 2011;2(1):e00342-10. doi:10.1128/mBio.00342-10
Touchon M, Cury J, Yoon EJ, et al. The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. Genome Biol Evol. 2014;6(10):2866-82. doi:10.1093/gbe/evu225
Lebreton F, van Schaik W, McGuire AM, et al. Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains. MBio. 2013;4(4). doi:10.1128/mBio.00534-13
Holder JW, Ulrich JC, DeBono AC, et al. Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development. PLoS Genet. 2011;7(9):e1002219. doi:10.1371/journal.pgen.1002219
McGuire AM, Cochrane K, Griggs AD, et al. Evolution of invasion in a diverse set of Fusobacterium species. MBio. 2014;5(6):e01864. doi:10.1128/mBio.01864-14
McGuire AM, Weiner B, Park ST, et al. Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis. BMC Genomics. 2012;13:120. doi:10.1186/1471-2164-13-120
Sczesnak A, Segata N, Qin X, et al. The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host Microbe. 2011;10(3):260-72. doi:10.1016/j.chom.2011.08.005
Valentino MD, McGuire AM, Rosch JW, et al. Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster. Nat Commun. 2014;5:5411. doi:10.1038/ncomms6411
Peleg AY, de Breij A, Adams MD, et al. The success of acinetobacter species; genetic, metabolic and virulence attributes. PLoS One. 2012;7(10):e46984. doi:10.1371/journal.pone.0046984