Wu Y, Hormozdiari F, Joo JWJ, Eskin E. Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. J Comput Biol. 2019;26(11):1203-1213. doi:10.1089/cmb.2018.0139
Guo MH, Plummer L, Chan YM, Hirschhorn JN, Lippincott MF. Burden Testing of Rare Variants Identified through Exome Sequencing via Publicly Available Control Data. Am J Hum Genet. 2018;103(4):522-534. doi:10.1016/j.ajhg.2018.08.016
Stirling DR, Swain-Bowden MJ, Lucas AM, Carpenter AE, Cimini BA, Goodman A. CellProfiler 4: improvements in speed, utility and usability. BMC Bioinformatics. 2021;22(1):433. doi:10.1186/s12859-021-04344-9
Zheng J, Richardson TG, Millard LAC, et al. PhenoSpD: an integrated toolkit for phenotypic correlation estimation and multiple testing correction using GWAS summary statistics. Gigascience. 2018;7(8). doi:10.1093/gigascience/giy090
Mohanty AK, Vuzman D, Francioli L, et al. novoCaller: a Bayesian network approach for de novo variant calling from pedigree and population sequence data. Bioinformatics. 2019;35(7):1174-1180. doi:10.1093/bioinformatics/bty749
Enache OM, Lahr DL, Natoli TE, et al. The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices. Bioinformatics. 2019;35(8):1427-1429. doi:10.1093/bioinformatics/bty784
Arachchi H, Wojcik MH, Weisburd B, et al. matchbox: An open-source tool for patient matching via the Matchmaker Exchange. Hum Mutat. 2018;39(12):1827-1834. doi:10.1002/humu.23655
Pedersen BS, Collins RL, Talkowski ME, Quinlan AR. Indexcov: fast coverage quality control for whole-genome sequencing. Gigascience. 2017;6(11):1-6. doi:10.1093/gigascience/gix090
Walker MA, Pedamallu CS, Ojesina AI, et al. GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts. Bioinformatics. 2018;34(24):4287-4289. doi:10.1093/bioinformatics/bty501
Ernst J, Kellis M. Chromatin-state discovery and genome annotation with ChromHMM. Nat Protoc. 2017;12(12):2478-2492. doi:10.1038/nprot.2017.124