Li H. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics. 2018;34(18):3094-3100. doi:10.1093/bioinformatics/bty191
Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y iv. Genome-wide profiling of heritable and de novo STR variations. Nat Methods. 2017;14(6):590-592. doi:10.1038/nmeth.4267
Dashnow H, Lek M, Phipson B, et al. STRetch: detecting and discovering pathogenic short tandem repeat expansions. Genome Biol. 2018;19(1):121. doi:10.1186/s13059-018-1505-2
Schaffner SF, Taylor AR, Wong W, Wirth DF, Neafsey DE. hmmIBD: software to infer pairwise identity by descent between haploid genotypes. Malar J. 2018;17(1):196. doi:10.1186/s12936-018-2349-7
Ding J, Condon A, Shah SP. Interpretable dimensionality reduction of single cell transcriptome data with deep generative models. Nat Commun. 2018;9(1):2002. doi:10.1038/s41467-018-04368-5
Tsherniak A, Vazquez F, Montgomery PG, et al. Defining a Cancer Dependency Map. Cell. 2017;170(3):564-576.e16. doi:10.1016/j.cell.2017.06.010
Aguet F, Cocucci E. Measuring Clathrin-Coated Vesicle Formation with Single-Molecule Resolution. Methods Mol Biol. 2018;1847:197-216. doi:10.1007/978-1-4939-8719-1_15
Kangeyan D, Dunford A, Iyer S, et al. A (fire)cloud-based DNA methylation data preprocessing and quality control platform. BMC Bioinformatics. 2019;20(1):160. doi:10.1186/s12859-019-2750-4
Chatterjee S, Chowdhury S, Mallick H, Banerjee P, Garai B. Group regularization for zero-inflated negative binomial regression models with an application to health care demand in Germany. Stat Med. 2018;37(20):3012-3026. doi:10.1002/sim.7804
Kuehn H, Liberzon A, Reich M, Mesirov JP. Using GenePattern for gene expression analysis. Curr Protoc Bioinformatics. 2008;Chapter 7:Unit 7.12. doi:10.1002/0471250953.bi0712s22