Zhu LJ, Holmes BR, Aronin N, Brodsky MH. CRISPRseek: a bioconductor package to identify target-specific guide RNAs for CRISPR-Cas9 genome-editing systems. PLoS One. 2014;9(9):e108424. doi:10.1371/journal.pone.0108424
Shukla SA, Rooney MS, Rajasagi M, et al. Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes. Nat Biotechnol. 2015;33(11):1152-8. doi:10.1038/nbt.3344
Hyman SE, Landis SC, Leshner AI. Research Into Brain Disorders as an Example of Targeted Science. JAMA. 2016;316(16):1673-1674. doi:10.1001/jama.2016.12412
Hawkins TL, McKernan KJ, Jacotot LB, MacKenzie JB, Richardson PM, Lander ES. A magnetic attraction to high-throughput genomics. Science. 1997;276(5320):1887-9.
Grabherr MG, Russell P, Meyer M, et al. Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics. 2010;26(9):1145-51. doi:10.1093/bioinformatics/btq102
Subramanian A, Kuehn H, Gould J, Tamayo P, Mesirov JP. GSEA-P: a desktop application for Gene Set Enrichment Analysis. Bioinformatics. 2007;23(23):3251-3. doi:10.1093/bioinformatics/btm369
Yilmaz P, Kottmann R, Field D, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol. 2011;29(5):415-20. doi:10.1038/nbt.1823
Järvstråt L, Johansson M, Gullberg U, Nilsson B. Ultranet: efficient solver for the sparse inverse covariance selection problem in gene network modeling. Bioinformatics. 2013;29(4):511-2. doi:10.1093/bioinformatics/bts717
Ordulu Z, Wong KE, Currall BB, et al. Describing sequencing results of structural chromosome rearrangements with a suggested next-generation cytogenetic nomenclature. Am J Hum Genet. 2014;94(5):695-709. doi:10.1016/j.ajhg.2014.03.020
Zhu Z, Li L, Zhang Y, Yang Y, Yang X. CompMap: a reference-based compression program to speed up read mapping to related reference sequences. Bioinformatics. 2015;31(3):426-8. doi:10.1093/bioinformatics/btu656