Software and Protocols

Mint-ChIP (low input, multiplexed ChIP-seq)
Detailed explanation and example of the protocol used for Mint-ChIP.
Further optimized protocol: one PCR stage instead of two, more barcodes, better H3 antibody, other small improvements.
Citation: van Galen P, et al. . Mol Cell. 2016.

 

(track visualization software)
Citation: The ENCODE Project Consortium. Nature. 2012.

 

(software for inferring chromatin regulator function)
Citation: Ram O, Goren A, et al.  Cell. 2011.

 

Proteomic profiling of chromatin modifications (Ó³»­´«Ã½ Proteomics Platform)

 

chromVAR