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Bacterial Genomics Group
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Abed J, Maalouf N, Manson AL, et al. Colon Cancer-Associated May Originate From the Oral Cavity and Reach Colon Tumors via the Circulatory System. Front Cell Infect Microbiol. 2020;10:400. doi:10.3389/fcimb.2020.00400.
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Anyansi C, Straub TJ, Manson AL, Earl AM, Abeel T. Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data. Front Microbiol. 2020;11:1925. doi:10.3389/fmicb.2020.01925.
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Bhattacharyya RP, Bandyopadhyay N, Ma P, et al. Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination. Nat Med. 2019. doi:10.1038/s41591-019-0650-9.
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Manson AL, Van Tyne D, Straub TJ, et al. Influence of agricultural antibiotic use on chicken meat-associated enterococci and their connection to the clinic. Appl Environ Microbiol. 2019. doi:10.1128/AEM.01559-19.
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Cohen KA, Manson AL, Desjardins CA, Abeel T, Earl AM. Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges. Genome Med. 2019;11(1):45. doi:10.1186/s13073-019-0660-8.
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Cohen KA, Manson AL, Abeel T, et al. Extensive global movement of multidrug-resistant strains revealed by whole-genome analysis. Thorax. 2019. doi:10.1136/thoraxjnl-2018-211616.
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Van Tyne D, Manson AL, Huycke MM, Karanicolas J, Earl AM, Gilmore MS. Impact of antibiotic treatment and host innate immune pressure on enterococcal adaptation in the human bloodstream. Sci Transl Med. 2019;11(487). doi:10.1126/scitranslmed.aat8418.
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Bachmann NL, Salamzade R, Manson AL, et al. Key Transitions in the Evolution of Rapid and Slow Growing Identified by Comparative Genomics. Front Microbiol. 2019;10:3019. doi:10.3389/fmicb.2019.03019.
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Reis-Cunha JL, Bartholomeu DC, Manson AL, Earl AM, Cerqueira GC. ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database. PLoS One. 2019;14(10):e0223364. doi:10.1371/journal.pone.0223364.