Publications

Identifying spatially variable genes by projecting to morphologically relevant curves.

Nicol PB, Ma R, Xu RJ, Moffitt JR, Irizarry RA. Identifying spatially variable genes by projecting to morphologically relevant curves. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.11.21.624653

Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening.

Gentili M, Carlson RJ, Liu B, et al. Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening. Cell systems. 2024. doi:10.1016/j.cels.2024.11.004

Disagreement on foundational principles of biological aging.

Gladyshev VN, Anderson B, Barlit H, et al. Disagreement on foundational principles of biological aging. PNAS nexus. 2024;3(12):pgae499. doi:10.1093/pnasnexus/pgae499

Synergistic label-free fluorescence imaging and miRNA studies reveal dynamic human neuron-glial metabolic interactions following injury.

Zhang Y, Savvidou M, Liaudanskaya V, et al. Synergistic label-free fluorescence imaging and miRNA studies reveal dynamic human neuron-glial metabolic interactions following injury. Science advances. 2024;10(50):eadp1980. doi:10.1126/sciadv.adp1980

Synergistic label-free fluorescence imaging and miRNA studies reveal dynamic human neuron-glial metabolic interactions following injury.

Zhang Y, Savvidou M, Liaudanskaya V, et al. Synergistic label-free fluorescence imaging and miRNA studies reveal dynamic human neuron-glial metabolic interactions following injury. Science advances. 2024;10(50):eadp1980. doi:10.1126/sciadv.adp1980

Single-cell spatial mapping reveals alteration of cell type composition and tissue microenvironment during early colorectal cancer formation.

Guha TK, Esplin ED, Horning AM, et al. Single-cell spatial mapping reveals alteration of cell type composition and tissue microenvironment during early colorectal cancer formation. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.11.20.622725

A framework for neural organoids, assembloids and transplantation studies.

Pașca SP, Arlotta P, Bateup HS, et al. A framework for neural organoids, assembloids and transplantation studies. Nature. 2024. doi:10.1038/s41586-024-08487-6

A framework for neural organoids, assembloids and transplantation studies.

Pașca SP, Arlotta P, Bateup HS, et al. A framework for neural organoids, assembloids and transplantation studies. Nature. 2024. doi:10.1038/s41586-024-08487-6

An explainable deep learning platform for molecular discovery.

Wong F, Omori S, Li A, et al. An explainable deep learning platform for molecular discovery. Nature protocols. 2024. doi:10.1038/s41596-024-01084-x

Single-cell epigenetic profiling reveals an interferon response-high program associated with deficiency in kidney cancer.

Camp SY, He MX, Cuoco MS, et al. Single-cell epigenetic profiling reveals an interferon response-high program associated with deficiency in kidney cancer. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.11.15.623837

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Publications

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