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Publications

An organism-level quantitative flux model of energy metabolism in mice.

Yuan B, Doxsey W, Tok Özlem, et al. An organism-level quantitative flux model of energy metabolism in mice. Cell metabolism. 2025. doi:10.1016/j.cmet.2025.01.008

CTCF/RAD21 organize the ground state of chromatin-nuclear speckle association.

Yu R, Roseman S, Siegenfeld AP, et al. CTCF/RAD21 organize the ground state of chromatin-nuclear speckle association. Nature structural & molecular biology. 2025. doi:10.1038/s41594-024-01465-6

Pancreatic injury induces β-cell regeneration in axolotl.

Powell CJ, Singer HD, Juarez AR, et al. Pancreatic injury induces β-cell regeneration in axolotl. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.23.634564

Epigenetic dysregulation of metabolic programs mediates liposarcoma cell plasticity.

Pimenta EM, Garza AE, Camp SY, et al. Epigenetic dysregulation of metabolic programs mediates liposarcoma cell plasticity. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.20.633920

Combined ADAMTS10 and ADAMTS17 inactivation exacerbates bone shortening and compromises extracellular matrix formation.

Taye N, Karoulias SZ, Balic Z, et al. Combined ADAMTS10 and ADAMTS17 inactivation exacerbates bone shortening and compromises extracellular matrix formation. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.23.634616

Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors.

Shanmugam V, Tokcan N, Chafamo D, et al. Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.24.631210

Defining the cell and molecular origins of the primate ovarian reserve.

Wamaitha SE, Rojas EJ, Monticolo F, et al. Defining the cell and molecular origins of the primate ovarian reserve. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.21.634052

Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes.

Ewald JD, Titterton KL, Bäuerle A, et al. Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.22.634152

Autism-Associated Genes and Neighboring lncRNAs Converge on Key Gene Regulatory Networks.

Andersen RE, Talukdar M, Sakamoto T, et al. Autism-Associated Genes and Neighboring lncRNAs Converge on Key Gene Regulatory Networks. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.20.634000

Genome-wide absolute quantification of chromatin looping.

Jusuf JM, Grosse-Holz S, Gabriele M, et al. Genome-wide absolute quantification of chromatin looping. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.13.632736